Publications 2024

Journal Articles          Review Articles          Preprints


Journal articles


Optimizing SureQuant for Targeted Peptide Quantification: a Technical Comparison with PRM and SWATH-MS Methods

Authors: Antelo-Varela, M.*, Bumann, D., and Schmidt, A.*

Published: Analytical Chemistry 2024

DOI: 10.1021/acs.analchem.4c03622


Pseudomonas aeruginosa faces a fitness trade-off between mucosal colonization and antibiotic tolerance during airway infection

Authors: Meirelles, L.A., Vayena, E., Debache, A., Schmidt, E., Rossy, T., Distler, T., Hatzimanikatis, V., and Persat, A.

Published: Nature Microbiology 2024

DOI: 10.1038/s41564-024-01842-3


Toxin-mediated depletion of NAD and NADP drives persister formation in a human pathogen

Authors: Santi, I., Dias Teixeira, R., Manfredi, P., Hernandez Gonzalez, H., Spiess, DC., Mas, G., Klotz, A., Kaczmarczyk, A., Zamboni, N., Hiller, S., and Jenal, U.

Published: EMBO Journal 2024

DOI: 10.1038/s44318-024-00248-5


Initiation of H1-T6SS dueling between Pseudomonas aeruginosa

Authors: George, M., Narayanan, S., Tejada-Arranz, A., Plack, A., and Basler, M.

Published: mBio 2024

DOI: 10.1128/mbio.00355-24


Transwell-based microphysiological platform for high-resolution imaging of airway tissues

Authors: Kurmashev, A., Boos, JA., Laventie, BJ., Swart, AL., Suetterlin, R., Junne, T., Jenal, U., and Hierlemann, A.

Published: Advanced Materials Technologies 2024

DOI: 10.1002/admt.202400326


Pseudomonas aeruginosa breaches respiratory epithelia through goblet cell invasion in a microtissue model

Authors: Swart, AL., Laventie, BJ., Sütterlin, R., Junne, T., Lauer, L., Manfredi, P. Jakonia, S., Yu, X., Karagkiozi, E., Okujava, R., and Jenal, U.

Published: Nature Microbiology 2024

DOI: 10.1038/s41564-024-01718-6

Preprint: 10.1101/2023.08.13.553119


A genetically encoded biosensor to monitor dynamic changes of c-di-GMP with high temporal resolution

Authors: Kaczmarczyk, A., van Vliet, S., Jakob, R.P., Teixeira, R.D., Scheidat, I., Reinders, A., Klotz, A., Maier, M. and Jenal, U.

Published in: Nature Communications 2024

DOI: 10.1038/s41467-024-48295-0


Genome-wide CRISPRi screens for high-throughput fitness quantification and identification of determinants for dalbavancin susceptibility in Staphylococcus aureus

Authors: Liu, X., de Bakker, V., Heggenhougen, MV., Mårli, MT., Frøynes, AH., Salehian, Z., Porcellato, D., Morales Angeles, D., Veening, J-W.*, and Kjos, M.*

Published: mSystems 2024

DOI: 10.1128/msystems.01289-23


A Far-Red Fluorescent Probe to Visualize Gram-Positive Bacteria in Patient Samples

Authors: Jantarug, K., Tripathi, V., Morin, B., Iizuka, A., Kuehl, R., Morgenstern, M., Clauss, M., Khanna, N., Bumann, D., and Rivera-Fuentes, P.

Published in: ACS Infectious Diseases 2024

DOI: 10.1021/acsinfecdis.4c00060


In Vivo Microrheology Reveals Local Elastic and Plastic Responses Inside 3D Bacterial Biofilms

Authors: Ohmura, T., Skinner, DJ., Neuhaus, K., Choi, GPT., Dunkel, J.*, and Knut Drescher, K.*

Published in: Advanced Materials 2024

DOI: 10.1002/adma.202314059


In situ analysis of osmolyte mechanisms of proteome thermal stabilization

Authors: Pepelnjak, M., Velten, B., Näpflin, N., von Rosen, T., Palmiero, U.C., Ko, J.H., Maynard, H.D., Arosio, P., Weber-Ban, E., de Souza, N., Huber W., and Picotti, P.

Published in: Nature Chemical Biology 2024

DOI: 10.1038/s41589-024-01568-7


Complete genome sequence of Pseudomonas aeruginosa phage Knedl

Authors: Maffei, E., Manner, C., Jenal, U., and Harms, A.

Published in: Microbiology Resource Announcements 2024

DOI: 10.1128/mra.01174-23


Phage Paride can kill dormant, antibiotic-tolerant cells of Pseudomonas aeruginosa by direct lytic replication

Authors: Maffei, E., Woischnig, A., Burkolter, M., Heyer, Humolli, D., Thürkauf, N., Bock, T., Y., Schmidt, A., Manfredi, P., Egli, A., Khanna, N., Jenal, U., and Harms, A.

Published in: Nature Communications 2024

DOI: 10.1038/s41467-023-44157-3


Review articles


Sophisticated natural products as antibiotics

Review

Authors: Lewis, K.*, Lee, R.E.*, Brötz-Oesterhelt, H., Hiller, S., Rodnina, M.V., Schneider, T., Weingarth, M. and Wohlgemuth, I.

Published in: Nature 2024

DOI: 10.1038/s41586-024-07530-w


Open microfluidics: droplet microarrays as next generation multiwell plates for high throughput screening

Perspective

Authors: Strutt, R., Xiong, B., Abegga, V.F., and Dittrich, P.S.

Published in: Lab Chip 2024

DOI: doi.org/10.1039/D3LC01024D


Revitalizing antibiotic discovery and development through in-vitro modelling of in-patient infection conditions

Comment

Authors: Sollier, J., Basler, M., Broz, P., Dittrich, PS., Drescher, K., Egli, A., Harms, A., Hierlemann, A., Hiller, S., King, CG., McKinney, JD., Moran-Gilad, J., Neher, RA., Page, MGP., Panke, S., Persat, A., Picotti, P., Rentsch, KM., Rivera-Fuentes, P., Sauer, U., Stolz, D., Tschudin-Sutter, S., van Delden, C., van Nimwegen, E., Veening, J.W., Zampieri, M. Zinkernagel, AS., Khanna, N., Bumann, D., Jenal. J., and Dehio, C.

Published in: Nature Microbiology 2024

DOI: 10.1038/s41564-023-01566-w

Free access to the article: https://edoc.unibas.ch/96596/