Ensembles de données
La RAM est un problème mondial. C’est pourquoi nous adhérons aux principes de la science ouverte et de la collaboration, et nous sommes fiers de publier nos données, afin que les scientifiques du monde entier puissent voir, développer et construire sur la base de notre travail.
Datasets from “Unlocking hidden phage diversity to complete the BASEL collection for systematic exploration of phage-host interactions”
Data supporting the publication: Zenodo
Code supporting the publication: Zenodo GitHub
NCBI submissions of phage genomes: NCBI BioProject
Predicted structures of phage proteins:
AnnaHegner_TF_Gp9 AnnaHegner_TF_Gp10 Anna_Hegner_TF_Gp13
ChristineMuster_TSP_Gp33
EliseAttenhofer_TSP_Gp54
EmilieLinder_TF_Gp59 EmilieLinder_TF_Gp59_Tfa_Gp60
HeidiAbel_TF_Gp15 HeidiAbel_TF_Gp15_Tfa_Gp16 HeidiAbel_TF_Gp17
HelliStehle_TF_Gp6
IrisVonRoten_TF_Gp22_Nterm IrisVonRoten_TF_Gp22_Cterm. IrisVonRoten_TF_Tip_Gp24
JakobBernoulli_TF_Gp36
KarinMuster_TSP_Gp59
LotteLoewe_TSP_Gp32
ManiWeber_TailFiber_Gp32 ManiWeber_TF_Gp144
MeretOppenheim_TF_Gp58
RudolfBernhard_TSP_Gp4
RuthEpting_TF_Gp29
SonjaBuckley_TSP_Gp32
11.04.2025
Datasets from “Amoxicillin Concentrations in Samples of Musculoskeletal Infections”
Data supporting the publication: Zenodo
27.06.2025
Datasets from “Optimizing SureQuant for Targeted Peptide Quantification: a Technical Comparison with PRM and SWATH-MS Methods”
MS proteomics raw data and analysis files: MassIVE
31.10.2024
Datasets from “Pseudomonas aeruginosa faces a fitness trade-off between mucosal colonization and antibiotic tolerance during airway infection”
NCBI SRA submissions of Tn-seq data: NCBI BioProject
Data supporting the publication: Zenodo
Code supporting the publication: Zenodo
30.10.2024
Datasets from “Pseudomonas aeruginosa type IV pili actively induce mucus contraction to form biofilms in tissue-engineered human airways“
Data supporting the publication: Zenodo
22.10.2024
Datasets from “Transwell-Based Microfluidic Platform for High-Resolution Imaging of Airway Tissues”
Microscopy images and analysis files: BioImage Archive
Other data supporting the publication: Zenodo
03.09.2024
Datasets from “Pseudomonas aeruginosa breaches respiratory epithelia through goblet cell invasion in a microtissue model”
Microscopy images and analysis files: BioImage Archive
Other data supporting the publication: Zenodo
01.06.2024
Datasets from “A Far-Red Fluorescent Probe to Visualize Gram-Positive Bacteria in Patient Samples”
Data supporting the publication: Zenodo
04.09.2023
Datasets from “Phage Paride can kill dormant, antibiotic-tolerant cells of Pseudomonas aeruginosa by direct lytic replication”
NCBI GenBank submissions of phage genomes: Aergia Cassandra Deifobo Ettore Paride Victoria
MS proteomics raw data and analysis files: PXD041131
Other data supporting the publication: Zenodo
Code supporting the publication: Zenodo
18.06.2024
Datasets from “High-throughput screening of BAM inhibitors in native membrane environment”
Data supporting the publication: Zenodo
09.07.2024
Datasets from “Single-cell segmentation in bacterial biofilms with an optimized deep learning method enables tracking of cell lineages and measurements of growth rates”
Single cell annotations in 3D bacterial biofilms of Vibrio cholerae: Zenodo
Code for iterative biofilm annotation: Zenodo GitHub
Code to merge StarDist masks: Zenodo GitHub
Code for napari plugin to merge StarDist masks: Zenodo GitHub
17.04.2023
Datasets from “Computational identification of a systemic antibiotic for gram-negative bacteria”
MicroED structure of Dynobactin: PDB 7t3h
Crystal structure of E.coli BamA beta-barrel in complex with dynobactin A: PDB 7r1v
E. coli BAM complex (BamABCDE) bound to dynobactin A: PDB 7r1w
26.09.2022
Datasets from “reComBat: batch-effect removal in large-scale multi-source gene-expression data integration”
reComBat code package: Zenodo GitHub
Summary of code from publication: Zenodo GitHub
28.09.2022
Datasets from “Antibiotic persistence of intracellular Brucella abortus“
Data supporting the publication: Zenodo
26.07.2022
Datasets from “Combining CRISPRi and metabolomics for functional annotation of compound libraries”
Metabolomics datasets supporting the publication: Zenodo
MS proteomics raw data and analysis files: PRIDE PXD024133
Genome sequencing reads of tegaserod or chloroxine resistant strains of E. coli K-12: NCBI BioProject
08.04.2022
Datasets from “CRISPRi-seq for genome-wide fitness quantification in bacteria”
Code for CRISPRi-seq: Zenodo GitHub
Code for 2FAST2Q package: Zenodo GitHub PyPI
07.01.2022
Datasets from “Dynamic persistence of intracellular bacterial communities of uropathogenic Escherichia coli in a human bladder-chip model of urinary tract infections”
Data supporting the publication: Zenodo
24.06.2021
Datasets from “Early invasion of the bladder wall by solitary bacteria protects uropathogenic E. coli from antibiotics and neutrophil swarms in an organoid model”
Data supporting the publication: Zenodo
19.05.2021
Datasets from “The antibiotic darobactin mimics a beta-strand to inhibit outer membrane insertase”
Crystal structure of E.coli BamA beta-barrel in complex with darobactin (crystal form 1): PDB 7nre
Crystal structure of E.coli BamA beta-barrel in complex with darobactin (crystal form 2): PDB 7nrf
Structure of the darobactin-bound E. coli BAM complex (BamABCDE): PDB 7nri EMD-12546
Raw mass spectrometry data files: Figshare
Code supporting the publication: Zenodo GitHub
14.04.2021
