Publications 2025
Journal Articles Review Articles Book Chapters Preprints
Journal articles
Mechanisms of Pseudomonas aeruginosa resistance to type VI secretion system attacks
Authors: Tejada-Arranz, A., Plack, A., Antelo-Varela, M., Kaczmarczyk, A., Klotz, A., Jenal, U., and Basler, M.
Published in: Nature Communications 2025
DOI: 10.1038/s41467-025-65777-x
Preprint: 10.1101/2024.10.26.620397
Reemergence of Brucella abortus, Israel, 2021
Authors: Bardenstein, S., Grupel, D., Even-Tov, B., Motro, Y., and Moran-Gilad, J.
Published in: Emerging Infectious Diseases 2025
Limited impact of Salmonella stress and persisters on antibiotic clearance
Authors: Fanous, J., Claudi, B., Tripathi, V., Li, J., Goormaghtigh F., and Bumann D.
Published in: Nature 2025
DOI: 10.1038/s41586-024-08506-6
Read more about the article: Research Briefing: Why a standard method overlooks the real reason some antibiotics fail
A human metabolic map of pharmacological perturbations reveals drug modes of action
Authors: Schuhknecht, L., Ortmayr, K., Jänes, J., Bläsi, M., Panoussis, E., Bors, S., Dorčáková, T., Fuhrer, T., Beltrao, P., and Zampieri, M.
Published in: Nature Biotechnology 2025
DOI: 10.1038/s41587-024-02524-5
Amoxicillin Concentrations in Samples of Musculoskeletal Infections
Authors: Erdmann, J., Kuehl, R., Morgenstern, M., Bumann, D., Clauss, M., Khanna, N., and Rentsch, K.M.
Published in: Helvetica Chimica Acta 2025
Bacteria use exogenous peptidoglycan as a danger signal to trigger biofilm formation
Authors: Vaidya, S., Saha, D., Rode, D.K.H., Torrens, G., Hansen, M.F., Singh, P.K., Jelli, E., Nosho, K., Jeckel, J., Göttig, S., Cava, F. and Drescher, K.
Published in: Nature Microbiology 2025
DOI: 10.1038/s41564-024-01886-5
Review articles
Comment
Decoding host-microbe interactions with engineered human organoids
Comment
Authors: Lucas A Meirelles and Alexandre Persat
Published in: EMBO Journal 2025
DOI: 10.1038/s44318-025-00387-3
Book chapters
Preprints
A ratiometric pH sensor for Gram-positive and Gram-negative bacteria
Authors: Kossmann, D., Iizuka, A., Khanna, N., Rivera-Fuentes, P.
Preprint: BioRxiv
Publication date: September 9, 2025
DOI: 10.1101/2025.09.09.675137
Microgeography of staphyloccoci in human tissue explains antibiotic failure
Authors: Tripathi, V., Morin, B., Antelo Varela, M., Loriol, A.A., Kurg, K., Jakonia, S., Ehsan, A., Herbert, S., Ferrand, A., Sauteur, L., Marro, F.C., Henselmann, N., Künnecke, J., Estermann, F., Strenger, K., Iizuka, A., Woischnig, A.-K., Claudi, B., Söderholm, S., Keller, P.M., Baumhoer, D., Bock, T., Jantarung, K., Riviera Fuentes, P., Meylan, S., Morgenstern, M., Clauss, M., Khanna, N., Kuehl, R., Bumann, D.
Preprint: BioRxiv
Publication date: September 12, 2025
DOI: 10.1101/2025.09.12.675782
Strain-resolved CRISPRi-Seq reveals conserved antibiotic vulnerabilities in Staphylococcus aureus
Authors: Mazzuoli, M.-V., Burnier, J., Schmid, A., Martin, L., Janssen, A., Gallay, C., Zinkernagel, A.S., Veening, J.-W
Preprint: BioRxiv
Publication date: October 13, 2025
DOI: 10.1101/2025.10.13.682098
A bioengineered human urothelial organoid model reveals the urine-urothelium interplay in tissue resilience and UPEC recurrence in urinary tract infections
Authors: Paduthol, G., Nikolaev, M., Sharma, K., Blanc, J., Tomasek, K., Schlunke, L.I.E., Borgeat, V., Ambrosini, G., Kolotuev, I., Clerc-Rosset, S., Gjorevski, N., Knott, G.W., Lütolf, M.P., Thacker, V.V., McKinney, J.D.
Preprint: BioRxiv
Publication date: October 30, 2025
DOI: 10.1101/2025.10.28.685030
Genome-scale CRISPRi profiling reveals metabolic vulnerabilities of uropathogenic Escherichia coli in human urine
Authors: Ortelli, M., Prakapaité, R., Müller, A., Miele, S.A.B., Fino, C., Klimke, S., Tschudin-Sutter, S., Jenal, U., De Bento Flores, C.E., Bikard, D., Dehio, C.
Preprint: BioRxiv
Publication date: October 31, 2025
DOI: 10.1101/2025.10.31.685768
Perfusable 3D human urothelial model for real-time analysis of bacterial infection dynamics and therapeutic interventions
Authors: Kurmashev, A., Sorg, I., Boos, J.A, Grassi, L., Sellner, B., Fino, C., Girgin, M., Mueller, A.L, Klimke, S., Tschudin-Sutter, S., Hierlemann, A., and Dehio, C.
Preprint: BioRxiv
Publication date: November 13, 2025
DOI: 10.1101/2025.11.12.687885
