Datasets
AMR is a global problem. We therefore embrace the principles of open science and collaboration, and are proud to publish our data, so that scientists around the world can see, expand and build on our work.
Dataset – Single-cell segmentation in bacterial biofilms with an optimized deep learning method enables tracking of cell lineages and measurements of growth rates
https://zenodo.org/record/7704410
https://zenodo.org/record/8192357
https://zenodo.org/record/7709693
https://zenodo.org/record/8182800
https://zenodo.org/record/818280
Dataset – Computational identification of a systemic antibiotic for gram-negative bacteria
https://www.ebi.ac.uk/pdbe/entry/pdb/7t3h
https://www.ebi.ac.uk/pdbe/entry/pdb/7r1v
https://www.ebi.ac.uk/pdbe/entry/pdb/7r1w
Dataset – reComBat: batch-effect removal in large-scale multi-source gene-expression data integration
https://github.com/BorgwardtLab/reComBat
https://github.com/BorgwardtLab/batchCorrectionPublicData
https://zenodo.org/record/8155099
https://zenodo.org/record/8154663
Dataset – Antibiotic persistence of intracellular Brucella abortus
doi:10.1371/journal.pntd.0010635.s005
doi:10.5281/zenodo.7043646
Dataset – Combining CRISPRi and metabolomics for functional annotation of compound libraries
https://www.nature.com/articles/s41589-022-00970-3#Sec32
https://www.ebi.ac.uk/pride/archive/projects/PXD024133
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA776168
https://zenodo.org/record/8214736
Dataset – CRISPRi-seq for genome-wide fitness quantification in bacteria
https://github.com/veeninglab/CRISPRi-seq
https://github.com/veeninglab/2FAST2Q/tree/V2.5.0
https://pypi.org/project/fast2q/
doi:10.5281/zenodo.7012813
https://zenodo.org/record/8124288
Dataset – Dynamic persistence of intracellular bacterial communities of uropathogenic Escherichia coli in a human bladder-chip model of urinary tract infections
Dataset – Early invasion of the bladder wall by solitary bacteria protects uropathogenic E. coli from antibiotics and neutrophil swarms in an organoid model
Dataset – The antibiotic darobactin mimics a beta-strand to inhibit outer membrane insertase
doi:10.2210/pdb7nre/pdb
doi:10.2210/pdb7nrf/pdb
doi:10.2210/pdb7nri/pdb
EMD-12546
doi:10.6084/m9.figshare.12179784
https://github.com/hiller-lab/kaur-jakob-2021
https://zenodo.org/record/8154971